ImgLib2 and BigDataViewer Hackathon Prague

Published in CEITEC, 2024

ImgLib2 and BigDataViewer Hackathon Prague

In April 2024, I took part in the ImgLib2 and BigDataViewer Hackathon held in Prague, Czech Republic. The hackathon brought together developers and researchers to work on Java-based image analysis tooling, especially focused on ImgLib2 and BDV.

My main contributions were on SAMJ, a Segment Anything Model integration for ImageJ, and other foundational improvements to the Java image processing stack.

🔗 Event Page – CEITEC
🔗 CEITEC
🔗 Chan Zuckerberg Initiative (CZI)

Highlights

  • Integration of new interactive tools like SAMJ into ImageJ.
  • Code and architecture improvements for ImgLib2 and BDV.
  • Support from CEITEC and the Chan Zuckerberg Initiative (CZI).