Publications

Peer-review Journals

SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model 2026

Published in Nature Communications

Carlos García-López-de-Haro, Caterina Fuster-Barceló, Curtis T. Rueden, Jónathan Heras, Vladimír Ulman, Daniel Franco-Barranco, Adrián Inés, Kevin W. Eliceiri, Jean-Christophe Olivo-Marin, Jean-Yves Tinevez, Daniel Sage, Arrate Muñoz-Barrutia

Assessing the reproducibility of a bioimage analysis workflow characterising tissue flow in Drosophila 2026

Published in Journal of Microscopy

Mélodie Ambroset, Cesar A. Valades Cruz, Libert Brice Tonfack, Rocco D’Antuono, Caterina Fuster-Barceló

ECG-Based Patient Identification: A Comprehensive Evaluation Across Health and Activity Conditions 2024

Published in IEEE Access

Caterina Fuster-Barceló, Carmen Cámara, Pedro Peris-López

The Crucial Role of Bioimage Analysts in Scientific Research and Publication 2024

Published in Journal of Cell Science, Online

Beth A. Cimini, Peter Bankhead, Rocco D'Antuono, Elnaz Fazeli, Julia Fernandez-Rodriguez, Caterina Fuster-Barceló, Robert Haase, Helena Klara Jambor, Martin L. Jones, Florian Jug, Anna H. Klemm, Anna Kreshuk, Stefania Marcotti, Gabriel G. Martins, Sara McArdle, Kota Miura, Arrate Muñoz-Barrutia, Laura C. Murphy, Michael S. Nelson, Simon F. Nørrelykke, Perrine Paul-Gilloteaux, Thomas Pengo, Joanna W. Pylvänäinen, Lior Pytowski, Arianna Ravera, Annika Reinke, Yousr Rekik, Caterina Strambio-De-Castillia, Daniel Thédié, Virginie Uhlmann, Oliver Umney, Laura Wiggins, Kevin W. Eliceiri

BioImage.IO Chatbot: A Personalized Assistant for BioImage Analysis Augmented by Community Knowledge Base 2023

Published in Nature Methods, Online

Wanlu Lei, Caterina Fuster-Barceló, Gabriel Reder, Arrate Muñoz-Barrutia, Wei Ouyang

Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ 2023

Published in bioRxiv, Preprint

Caterina Fuster-Barceló, Carlos García López de Haro, Estibaliz Gómez-de-Mariscal, Wei Ouyang, Jean-Christophe Olivo-Marin, Daniel Sage, Arrate Muñoz-Barrutia

DL4MicEverywhere: Deep learning for microscopy made flexible, shareable, and reproducible 2023

Published in Nature Methods, Published in Volume 21, June 2024

Iván Hidalgo-Cenalmor, Joanna W. Pylvänäinen, Mariana G. Ferreira, Craig T. Russell, Alon Saguy, Ignacio Arganda-Carreras, Yoav Shechtman, AI4Life Horizon Europe Program Consortium, Guillaume Jacquemet, Ricardo Henriques, Estibaliz Gómez-de-Mariscal

Exploring the Power of PPG Matrix for Atrial Fibrillation Detection with Integrated Explainability 2023

Published in Engineering Applications of Artificial Intelligence, Online

Caterina Fuster-Barceló, Alejandro Guerrero-López, Carmen Cámara, Pedro Peris-López

ELEKTRA: ELEKTRokardiomatrix Application to Biometric Identification with Convolutional Neural Networks 2022

Published in Neurocomputing, Netherlands

Caterina Fuster-Barceló, Pedro Peris-López, Carmen Cámara

Preprints

AI4Life Open Calls and Public Challenges: why, how, and what we have learned 2026

Published in bioRxiv

Vera Galinova, Mehdi Seifi, Beatriz Serrano Solano, Kristina Lidayova, Damian Dalle Nogare, Agustin Andres Corbat, Joshua Talks, Edoardo Giacomello, Estibaliz Gomez-de-Mariscal, Mariana G. Ferreira, Caterina Fuster-Barceló, Juan Manuel Battagliotti, Carlos García-López-de-Haro, Benjamin Salmon, Melisande Croft, Si Young Yie, Guillermo Rey-Paniagua, Xiaotian Hu, Sungjun Cho, Aagam Sheth, Chhayansh Porwal, Xiaomeng Li, AI4Life Consortium, Ricardo Henriques, Xinyang Li, Alexander Krull, Anna Klemm, Arrate Muñoz Barrutia, Anna Kreshuk, Wei Ouyang, Florian Jug, Joran Deschamps

OREHAS: A fully automated deep-learning pipeline for volumetric endolymphatic hydrops quantification in MRI 2026

Caterina Fuster-Barceló, Claudia Castrillón, Laura Rodrigo-Muñoz, Victor Manuel Suárez-Vega, Nicolás Pérez-Fernández, Gorka Bastarrika, Arrate Muñoz-Barrutia

The impact of gamification on learning outcomes: experiences from a Biomedical Engineering course 2025

Gonzalo R. Ríos-Muñoz, Caterina Fuster-Barceló, Arrate Muñoz-Barrutia

Scaffolding Collaborative Learning in STEM: A Two-Year Evaluation of a Tool-Integrated Project-Based Methodology 2025

Caterina Fuster-Barceló, Gonzalo R. Ríos-Muñoz, Arrate Muñoz-Barrutia

Conference Proceedings

Are Vision Foundation Models Foundational for Electron Microscopy Image Segmentation? 2026

Published in Learning Meaningful Representations of Life (LMRL) Workshop at ICLR 2026

Caterina Fuster-Barceló, Virginie Uhlmann

Can You Afford to Research? The Financial Strain of Ph.D. Students in Spain 2024

Published in Precarity and Instability in Academia Symposium (PIAS)

Caterina Fuster-Barceló, Alejandro Guerrero-López

Estimación de la proporción de hidrops endolinfático en pacientes con la enfermedad de Mènière 2023

Published in CASEIB 2023, Cartagena, Murcia, Spain

G. R. Delicado-Correa, Caterina Fuster-Barceló, Víctor Manuel Suárez-Vega, Nicolás Pérez-Fernández, Gorka Bastarrika, Arrate Muñoz-Barrutia

Unveiling Hidden Patterns: Harnessing the Power of Short PPG-Traces for Atrial Fibrillation Detection 2023

Published in IEEE 19th International Conference on Body Sensor Networks (BSN), Cambridge, UK

Pedro Peris-López, Caterina Fuster-Barceló, Carmen Cámara, H. Martin

Conference Abstracts

Harnessing Deep Learning in Bioimaging: The DeepImageJ Journey 2024

Published in Effectively Communicating Bioimage Analysis Workshop, East Sussex, United Kingdom

Caterina Fuster-Barceló, Estibaliz Gómez-de-Mariscal, Daniel Sage, Arrate Muñoz-Barrutia