Deep Learning for Bioimage Analysis
Date:
In May 2025, I participated in the EPFL Open Microscopy & AI Workshop, where I gave a presentation and led a hands-on workshop on Deep Learning for Bioimage Analysis, aligned with the AI4Life initiative.
The session included:
- Presentation on AI workflows in microscopy following the AI4Life approach
- Hands-on guide using deepImageJ for image segmentation
- Interactive image annotation with SAMJ, powered by the Segment Anything Model
- Practical tools and strategies for deploying DL models in ImageJ/Fiji
📁 Slides & Materials: Zenodo (10.5281/zenodo.15023685)
💻 GitHub Repository: Workshop Materials – EPFL 2025
This workshop aimed to equip researchers with accessible tools and workflows to bridge the gap between AI model development and real-world application in the life sciences.