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Jupyter notebook markdown generator

Posts

Future Blog Post

less than 1 minute read

Published: January 01, 2199

This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.

Blog Post number 4

less than 1 minute read

Published: August 14, 2015

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

Blog Post number 3

less than 1 minute read

Published: August 14, 2014

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

Blog Post number 2

less than 1 minute read

Published: August 14, 2013

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

Blog Post number 1

less than 1 minute read

Published: August 14, 2012

This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.

hackathons

Accessibility of DL models from Java Hackathon

Published: February 05, 2023

Global BioImaging and AI4Life organized a hackathon in Milan from February 6-10, 2023. The overarching goal of this event was to improve the accessibility of Deep Learning methods in Java-based image analysis tools and libraries. The event was held at the Human Technopole and was attended by a total of 21 participants from various parts of the world.

portfolio

Per què el 5G no us deixarà sense hereus?

Article for the Setmanari Felanitx newspaper about healthcare and 5G (catalan)

Outcomes of the Hackathon on Web and Cloud Infrastructure for AI-Powered BioImage Analysis

Article in FocalPlane about the outcomes of the hackathon in SciLifeLab, KTH, Stockholm

AI4Life Event Highlights: A Successful Fusion of Workshops, Hackathon, and Uploathon

Article in FocalPlane about the outcomes of the workshop and hackathon in UC3M, Madrid

Read Papers Template for Notion

My own Notion template to keep truck of all papers read.

publications

ELEKTRA: ELEKTRokardiomatrix Application to biometric identification with Convolutional Neural Networks

Published in Published at Neurocomputing, 2021

Biometric identification using ELEKTRokardiomatrix by Convolutional Neural Networks

Recommended citation: Fuster-Barceló, Caterina, Pedro Peris-Lopez, and Carmen Camara. "ELEKTRA: ELEKTRokardiomatrix application to biometric identification with convolutional neural networks." Neurocomputing 506 (2022): 37-49. https://doi.org/10.1016/j.neucom.2022.07.059

Featured in: https://www.20minutos.es/salud/actualidad/5084580/

Exploring the Power of Ppg Matrix for Atrial Fibrillation Detection with Integrated Explainability

Published in Engineering Applications of Artificial Intelligence, 2023

Exploring the power of photoplethysmogram matrix for atrial fibrillation detection with integrated explainability

Recommended citation: Fuster-Barceló, C., Guerrero-López, A., Camara, C., & Peris-Lopez, P. (2024). Exploring the power of photoplethysmogram matrix for atrial fibrillation detection with integrated explainability. Engineering Applications of Artificial Intelligence, 133, 108325. https://doi.org/10.1016/j.engappai.2024.108325

Harnessing Deep Learning in Bioimaging: The DeepImageJ Journey

Published in preprint, 2023

Detecting Atrial Fibrillation over PPG Matrix Images with Explainable AI

Recommended citation: Caterina Fuster-Barceló, Estibaliz Gómez-de-Mariscal, Daniel Sage, Arrate Muñoz-Barrutia, "Harnessing Deep Learning in Bioimaging: The DeepImageJ Journey" ECBA Workshop, 2024 https://dx.doi.org/10.2139/ssrn.4514512

Unveiling Hidden Patterns: Harnessing the Power of Short PPG-Traces for Atrial Fibrillation Detection

Published in 2023 IEEE 19th International Conference on Body Sensor Networks (BSN), 2023

Unveiling Hidden Patterns: Harnessing the Power of Short PPG-Traces for Atrial Fibrillation Detection

Recommended citation: Pedro Peris-Lopez, Caterina Fuster-Barceló, Carmen Camara, and Honorio Martin. "Unveiling Hidden Patterns: Harnessing the Power of Short PPG-Traces for Atrial Fibrillation Detection" https://ieeexplore.ieee.org/abstract/document/10331002

DL4MicEverywhere: Deep learning for microscopy made flexible, shareable, and reproducible

Published in , 2023

DL4MicEverywhere: Deep learning for microscopy made flexible, shareable, and reproducible

Recommended citation: DL4MicEverywhere: Deep learning for microscopy made flexible, shareable, and reproducible Iván Hidalgo-Cenalmor, Joanna W Pylvänäinen, Mariana G Ferreira, Craig T Russell, Ignacio Arganda-Carreras, AI4Life Consortium, Guillaume Jacquemet, Ricardo Henriques, Estibaliz Gómez-de-Mariscal bioRxiv 2023.11.19.567606; doi: https://doi.org/10.1101/2023.11.19.567606 https://www.biorxiv.org/content/10.1101/2023.11.19.567606v1.abstract

Estimación de la proporción de hidrops endolinfático en pacientes con la enfermedad de Mèniére

Published in CASEIB, 2023

Estudio sobre la proporción de hidrops endolinfático en pacientes con la enfermedad de Mèniére con técnicas de Deep Learning.

Recommended citation: G.R. Delicado-Correa, C. Fuster-Barceló, V.M. Suárez-Vega, N. Pérez-Fernández, G. Bastarrika, A. Muñoz-Barrutia "Estimación de la proporción de hidrops endolinfático en pacientes con la enfermedad de Mèniére" CASEIB (2023).

Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ

Published in , 2023

Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ

Recommended citation: Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ Caterina Fuster-Barceló, Carlos García López de Haro, Estibaliz Gómez-de-Mariscal, Wei Ouyang, Jean-Christophe Olivo-Marin, Daniel Sage, Arrate Muñoz-Barrutia bioRxiv 2024.01.12.575015; doi: https://doi.org/10.1101/2024.01.12.575015 https://www.biorxiv.org/content/10.1101/2024.01.12.575015v1.abstract

BioImage.IO Chatbot: A Personalized Assistant for BioImage Analysis Augmented by Community Knowledge Base

Published in Nature Methods, 2023

BioImage.IO Chatbot: Transforming Bioimage Analysis

Recommended citation: Lei, W., Fuster-Barceló, C., Reder, G. et al. BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging. Nat Methods 21, 1368–1370 (2024). https://doi.org/10.1038/s41592-024-02370-y https://rdcu.be/dQuw7

The Crucial Role of Bioimage Analysts in Scientific Research and Publication

Published in Journal of Cell Science, 2024

A perspective on the critical contributions and challenges of bioimage analysts in biological research.

Recommended citation: B.A. Cimini, P. Bankhead, R. d'Antuono, et al., 'The Crucial Role of Bioimage Analysts in Scientific Research and Publication,' Journal of Cell Science, vol. 137, no. 20, 2024. DOI: 10.1242/jcs.262322. https://journals.biologists.com/jcs/article/137/20/jcs262322/362545

Can You Afford to Research? The Financial Strain of Ph.D. Students in Spain

Published in Precarity and Instability in Academia Symposium (PIAS), 2024

An analysis of the financial challenges facing Ph.D. students in Spain, focusing on scholarships and living costs.

Recommended citation: C. Fuster-Barceló and A. Guerrero-López, 'Can You Afford to Research? The Financial Strain of Ph.D. Students in Spain,' Proceedings of the Precarity and Instability in Academia Symposium (PIAS), 2024. https://pias.cc/proceedings/afford-to-research.pdf

ECG-Based Patient Identification: A Comprehensive Evaluation Across Health and Activity Conditions

Published in IEEE Access, 2024

A comprehensive evaluation of ECG-based patient identification under health and activity conditions.

Recommended citation: C. Fuster-Barceló, C. Cámara, and P. Peris-López, "ECG-Based Patient Identification: A Comprehensive Evaluation Across Health and Activity Conditions," in IEEE Access, doi: 10.1109/ACCESS.2024.3519462. https://ieeexplore.ieee.org/abstract/document/10804759

talks

Protegiendo el oro con tu corazón

Published: April 23, 2022

Más información en Women Techmakers Madrid.

Protegiendo el oro con tu corazón y un poco de Python

Published: October 01, 2022

La charla entera la podéis ver aquí:

Skype A Scientist

Published: November 08, 2022

Thanks to the Skype A Scientist Program I was connected to Gerda Resinger from the Linzer Technikum Highschool to give last year students a talk.

IDOVEN - Protegiendo el oro con tu corazón

Published: November 23, 2022

I had the pleasure to visit IDOVEN and give a small talk about my PhD Thesis in the Telefónica Building in Gran vía, where their office is placed.

GitHub Copilot, what is it and how can I get it?

Published: May 29, 2023

I had the pleasure to show to my collegues from the Department a short presentation about GitHub Copilot and their insights. I hope you enjoy it!

¿Quién me lo habría dicho?

Published: June 02, 2023

He tenido el placer de dar una pequeña charla en la semifinal de Unidreams sobre mi trayectoria profesional. La he tituloado ¿Quién me lo habría dicho? porque si alguien me llega a preguntar cuando tenía 18 años qué quería ser de mayor, no hubiera dicho ni de lejos que iba a ser ingeniera y menos aún que iba a tener un doctorado en Ciencia y Tecnología Informática.

Leveraging Cloud-Based Virtual Desktops for Bioimage Analysis with BAND and deepImageJ

Published: October 19, 2023

I had the pleasure to present our work on leveraging cloud-based virtual desktops for bioimage analysis with BAND and deepImageJ at the I2K 2023 conference.

Harnessing deep learning in bioimaging: the deepImageJ journey

Published: February 14, 2024

I had the pleasure to attend and present at the Workshop for Effectively Communicating Bioimage Analysis in East Sussex, UK organised by The Company of Biologists and Focal Plane. In this workshop not only I had the most precious time at the Buxted Park but also I had the opportunity to present the deepImageJ project and learn from the best in the field.

The BioImage.IO Chatbot

Published: March 01, 2024

I had the pleasure to present our precious BioImage.IO Chatbot at the Virtual Pub of Euro-Bioimaging as part of the AI4Life Project.

Meet the BioImage.IO Chatbot

Published: April 22, 2024

Since January 2024, Elixir has been hosting virtual talks on generative AI. I was fortunate to secure a presentation slot to showcase the BioImage.IO Chatbot and its latest features. This includes the integration of bio.tools from Elixir into our chatbot’s knowledge base.

Transformers, Vision Transformers and SAMJ

Published: June 10, 2024

During the AI4Life Workshop of Zero-Code Tools and BioImage Model Zoo Community Partners I had the pleasure to give a presentation about Transformers, Vision Transformers and our new development for a Fiji Plugin:SAMJ. Great thanks to Daniel Sage and Carlos J. García López de Haro whom I had the pleasure to present with.

BioImage.IO Chatbot

Published: June 11, 2024

During the AI4Life Workshop of Zero-Code Tools and BioImage Model Zoo Community Partners I had the pleasure to give a presentation about the BioImage.IO Chatbot together with Wanlu Lei, Benedict Diederich, Songtao Cheng, and Wei Ouyang.

BioImage.IO Chatbot Talk

Published: June 28, 2024

On June 2024 I had the pleasure to present the BioImage.IO Chatbot at the ZIDAS Summer School in ETH Zurich, Switzerland. The ZIDAS Summer School is a unique event that brings together leading experts in the field of bioimage analysis, providing a platform for knowledge exchange and collaboration.